Commit 7bb9c446 authored by Benjamin Murauer's avatar Benjamin Murauer Committed by Michael Vötter
Browse files

Resolve "get rid of argparse"

parent 324af920
"""Declaring the main method of this package."""
import argparse
from dbispipeline.cli.main import main
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='executes dbis config files')
# TODO: configurationfile is required but it is i.e. not needed for restore
parser.add_argument('plan', help='file that holds config')
parser.add_argument('-f',
'--force',
action='store_true',
help='Run with dirty git')
parser.add_argument('--dryrun',
action='store_true',
help='run without sending results to database.')
parser.add_argument(
'-m',
'--mail',
choices=[None, 'run', 'total'],
default=None,
help='Mail notification level. Choose one of [None, \'run\', \'total\''
']. If set no None, no mails will be sent. if set to \'run\', one info'
' mail will be sent for each run. If set to \'total\', one mail will '
'be sent after the entire pipeline is complete.')
parser.add_argument(
'--restore',
default=None,
type=str,
help='Restores the backup contained in the given file.')
parser.add_argument(
'--slurm',
action='store_true',
help='send this job to the slurm job queue instead of running it local'
)
parser.add_argument('-v',
'--verbose',
action='store_true',
help='increase logging')
args = parser.parse_args()
main(args.dryrun, args.force, args.verbose, args.slurm, args.restore,
args.mail, args.plan)
main()
......@@ -30,12 +30,6 @@ from dbispipeline.utils import restore_backup
' mail will be sent for each run. If set to \'total\', one mail will '
'be sent after the entire pipeline is complete.')
@click.argument('plan', type=click.Path(exists=True))
def _main(dryrun, force, verbose, slurm, restore, mail, plan):
main(dryrun, force, verbose, slurm, restore, mail, plan)
# this method is split to allow the legacy method of invoking via the modules'
# __main__.py file to re-use this code.
def main(dryrun, force, verbose, slurm, restore, mail, plan):
"""Entry point that executes the pipeline given a configuration."""
if verbose:
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment